Update tools versions in stubtest workflow (#13582)

stubs/atheris/METADATA.toml

@@ -4,3 +4,7 @@ partial_stub = true
 
 [tool.stubtest]
 ignore_missing_stub = true
+# TODO (2025-03-05): unskip once `atheris` can be installed on `ubuntu-24.04`,
+# see https://github.com/python/typeshed/pull/13582 and
+# https://github.com/google/atheris/issues/82
+skip = true

stubs/gdb/METADATA.toml

@@ -13,3 +13,6 @@ extra_description = """\
 [tool.stubtest]
 platforms = ["linux"]
 apt_dependencies = ["gdb"]
+# TODO (2025-03-05): unskip once `gdb` can be installed on `ubuntu-24.04`,
+# see https://github.com/python/typeshed/pull/13582
+skip = true

stubs/openpyxl/@tests/stubtest_allowlist.txt

@@ -195,7 +195,3 @@ openpyxl.worksheet.smart_tag.CellSmartTagPr.__init__
 openpyxl.worksheet.smart_tag.CellSmartTags.__init__
 openpyxl.worksheet.table.TableColumn.__init__
 openpyxl.worksheet.table.XMLColumnProps.__init__
-
-# Inherited from the stdlib, where we lie about the presence
-# of this method in order to mark it as deprecated.
-openpyxl.xml.functions.Element.__bool__

stubs/requests/@tests/stubtest_allowlist.txt

@@ -2,6 +2,3 @@
 requests.packages.mod
 requests.packages.package
 requests.packages.target
-
-# Alias for builtins.bytes
-requests.compat.bytes.__buffer__