Fix some stubtest complaints before they happen (#9585)

Add missing objects to various stubs

stubs/pyinstaller/PyInstaller/__main__.pyi

@@ -1,4 +1,5 @@
 # https://pyinstaller.org/en/stable/usage.html#running-pyinstaller-from-python-code
+import logging
 from _typeshed import SupportsKeysAndGetItem
 from collections.abc import Iterable
 from typing_extensions import TypeAlias
@@ -8,4 +9,6 @@ _PyIConfig: TypeAlias = (
     SupportsKeysAndGetItem[str, bool | str | list[str] | None] | Iterable[tuple[str, bool | str | list[str] | None]]
 )
 
+logger: logging.Logger
+
 def run(pyi_args: Iterable[str] | None = ..., pyi_config: _PyIConfig | None = ...) -> None: ...

stubs/pyinstaller/PyInstaller/utils/hooks/__init__.pyi

@@ -1,5 +1,6 @@
 # https://pyinstaller.org/en/stable/hooks.html
 
+import logging
 from _typeshed import StrOrBytesPath, StrPath
 from collections.abc import Callable, Iterable
 from typing import Any
@@ -13,6 +14,7 @@ from PyInstaller.utils.hooks.win32 import get_pywin32_module_file_attribute as g
 
 conda_support = conda
 
+logger: logging.Logger
 PY_IGNORE_EXTENSIONS: set[str]
 hook_variables: dict[str, str]